Agent-based modelling of cholera diffusion

This paper introduces a spatially explicit agent-based simulation model for micro-scale cholera diffusion. The model simulates both an environmental reservoir of naturally occurring V. cholerae bacteria and hyperinfectious V. cholerae. Objective of the research is to test if runoff from open refuse dumpsites plays a role in cholera diffusion. A number of experiments were conducted with the model for a case study in Kumasi, Ghana, based on an epidemic in 2005. Experiments confirm the importance of the hyperinfectious transmission route, however, they also reveal the importance of a representative spatial distribution of the income classes. Although the contribution of runoff from dumpsites can never be conclusively proven, the experiments show that modelling the epidemic via this mechanism is possible and improves the model results. Relevance of this research is that it shows the possibilities of agent-based modelling combined with pattern reproduction for cholera diffusion studies. The proposed model is simple in its setup but can be extended by adding additional elements such as human movement and change of behaviour of individuals based on disease awareness. Eventually, agent-based models will open opportunities to explore policy related research questions related to interventions to influence the diffusion process

Updating and using the EO4GEO Body of Knowledge for (AI) concept annotation

The EO4GEO Body of Knowledge (BoK) serves as a vocabulary for the domain of geoinformation and earth observation, supporting the annotation of online resources. This paper presents how the BoK is designed, maintained and improved. We discuss how the BoK content can be extended, using the example of integrating artificial intelligence (AI) concepts and show how annotation is done by adding persistent concept identifiers in the metadata of training materials. This platform allows us to share online information with clarified semantics. A prolonged use necessitates the incentivisation of an active expert community and a further adoption of infrastructure standards

Bayesian networks for spatial learning: a workflow on using limited survey data for intelligent learning in spatial agent-based models

Machine learning (ML) algorithms steer agent decisions in agent-based models (ABMs), serving as a vehicle for implementing behaviour changes during simulation runs. However, when training an ML algorithm, obtaining large sets of micro-level human behaviour data is often problematic. Information on human behaviour is often collected via surveys of relatively small sample sizes. This paper presents a methodology for training a learning algorithm to guide agent behaviour in a spatial ABM using a limited survey data sample. We apply different implementation strategies using survey data and Bayesian networks (BNs). By being grounded in probabilistic directed graphical models, BNs stand out among other learning algorithms in that they can be based on expert knowledge and/or known datasets. This paper presents four alternative implementations of data-driven BNs to support agent decisions in a spatial ABM. We differentiate between training BNs prior to, or during the simulation runs, using only survey data or a combination of survey data and expert knowledge. The four different implementations are then illustrated using a spatial ABM of cholera diffusion for Kumasi, Ghana. The results indicate that a balance between expert knowledge and survey data provides the best control over the learning process of the agents and produces the most realistic agent behaviour

Checking the Consistency of Volunteered Phenological Observations While Analysing Their Synchrony

The increasing availability of volunteered geographic information (VGI) enables novel studies in many scientific domains. However, inconsistent VGI can negatively affect these studies. This paper describes a workflow that checks the consistency of Volunteered Phenological Observations (VPOs) while considering the synchrony of observations (i.e., the temporal dispersion of a phenological event). The geographic coordinates, day of the year (DOY) of the observed event, and the accumulation of daily temperature until that DOY were used to: (1) spatially group VPOs by connecting observations that are near to each other, (2) define consistency constraints, (3) check the consistency of VPOs by evaluating the defined constraints, and (4) optimize the constraints by analysing the effect of inconsistent VPOs on the synchrony models derived from the observations. This workflow was tested using VPOs collected in the Netherlands during the period 2003⁻2015. We found that the average percentage of inconsistent observations was low to moderate (ranging from 1% for wood anemone and pedunculate oak to 15% for cow parsley species). This indicates that volunteers provide reliable phenological information. We also found a significant correlation between the standard deviation of DOY of the observed events and the accumulation of daily temperature (with correlation coefficients ranging from 0.78 for lesser celandine, and 0.60 for pedunculate oak). This confirmed that colder days in late winter and early spring lead to synchronous flowering and leafing onsets. Our results highlighted the potential of synchrony information and geographical context for checking the consistency of phenological VGI. Other domains using VGI can adapt this geocomputational workflow to check the consistency of their data, and hence the robustness of their analyses

Checking the consistency of volunteered phenological observations while analysing their synchrony

The increasing availability of volunteered geographic information (VGI) enables novel studies in many scientific domains. However, inconsistent VGI can negatively affect these studies. This paper describes a workflow that checks the consistency of Volunteered Phenological Observations (VPOs) while considering the synchrony of observations (i.e., the temporal dispersion of a phenological event). The geographic coordinates, day of the year (DOY) of the observed event, and the accumulation of daily temperature until that DOY were used to: (1) spatially group VPOs by connecting observations that are near to each other, (2) define consistency constraints, (3) check the consistency of VPOs by evaluating the defined constraints, and (4) optimize the constraints by analysing the effect of inconsistent VPOs on the synchrony models derived from the observations. This workflow was tested using VPOs collected in the Netherlands during the period 2003–2015. We found that the average percentage of inconsistent observations was low to moderate (ranging from 1% for wood anemone and pedunculate oak to 15% for cow parsley species). This indicates that volunteers provide reliable phenological information. We also found a significant correlation between the standard deviation of DOY of the observed events and the accumulation of daily temperature (with correlation coefficients ranging from 0.78 for lesser celandine, and 0.60 for pedunculate oak). This confirmed that colder days in late winter and early spring lead to synchronous flowering and leafing onsets. Our results highlighted the potential of synchrony information and geographical context for checking the consistency of phenological VGI. Other domains using VGI can adapt this geocomputational workflow to check the consistency of their data, and hence the robustness of their analyses.</p